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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n4b WWZ Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.956
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.891
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.846
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.827
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.804
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.794
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.786
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.784
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.775
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.772
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.770
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.768
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.766
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.766
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.759
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.758
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.758
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.757
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.754
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.754
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.742
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.740
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.739
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.738
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.735
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.734
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.731
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.730
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.727
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.726
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.725
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.724
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.724
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.722
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.718
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.717
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.714
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.714
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.712
3mho J43Carbonic anhydrase 2 4.2.1.1 0.709
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.707
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.706
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.698
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.695
3myq E27Carbonic anhydrase 2 4.2.1.1 0.694
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.693
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.688
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.687
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.687
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.684
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.681
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.677
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.676
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.675
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.675
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.672
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.670
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.668
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.667
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.666
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.663
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.662
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.661
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.658
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.657
3hku TORCarbonic anhydrase 2 4.2.1.1 0.655
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.654
1ttm 667Carbonic anhydrase 2 4.2.1.1 0.654
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.653
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.652
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.650
4xiw AZMCarbonic anhydrase, alpha type / 0.650