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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n3a FMN Protein NrdI

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n3a FMNProtein NrdI / 1.243
3n3b FMNProtein NrdI / 1.114
3n39 FMNProtein NrdI / 1.064
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.909
4bmo FMNProtein NrdI / 0.897
2bf4 FMNNADPH--cytochrome P450 reductase / 0.859
4bmp FMNProtein NrdI / 0.847
3ojx FMNNADPH--cytochrome P450 reductase / 0.826
3qe2 FMNNADPH--cytochrome P450 reductase / 0.816
2fcr FMNFlavodoxin / 0.805
4y7c FMNNADPH--cytochrome P450 reductase / 0.777
3ojw FMNNADPH--cytochrome P450 reductase / 0.775
3qfr FMNNADPH--cytochrome P450 reductase / 0.773
4oxx FMNCindoxin / 0.769
1fue FMNFlavodoxin / 0.756
2bn4 FMNNADPH--cytochrome P450 reductase / 0.755
3f6s FMNFlavodoxin / 0.754
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.744
1amo FMNNADPH--cytochrome P450 reductase / 0.737
4j8p FMNFlavodoxin / 0.720
2ohh FMNType A flavoprotein FprA 1 0.719
2v5u FMNFlavodoxin / 0.714
1ych FMNNitric oxide reductase 1 0.704
1ja0 FMNNADPH--cytochrome P450 reductase / 0.701
2ohj FMNType A flavoprotein FprA 1 0.701
1akw FMNFlavodoxin / 0.699
1c7f FMNFlavodoxin / 0.699
1ofv FMNFlavodoxin / 0.698
1ycf FMNNitric oxide reductase 1 0.695
1ycg FMNNitric oxide reductase 1 0.694
2v5v FMNFlavodoxin / 0.691
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.690
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.690
2q9u FMNA-type flavoprotein / 0.689
1j8q FMNFlavodoxin / 0.688
3klb FMNUncharacterized protein / 0.688
1czn FMNFlavodoxin / 0.686
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.686
5xra FMNCannabinoid receptor 1 / 0.685
1j9g FMNFlavodoxin / 0.684
1ja1 FMNNADPH--cytochrome P450 reductase / 0.681
1aku FMNFlavodoxin / 0.680
3esz FMNFlavodoxin / 0.680
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.680
4yao FMNNADPH--cytochrome P450 reductase / 0.679
5tgz FMNCannabinoid receptor 1 / 0.679
2w5u FMNFlavodoxin / 0.676
3e4v FMNUncharacterized protein / 0.675
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.674
1xyy FMNFlavodoxin / 0.673
1akr FMNFlavodoxin / 0.672
2g37 FADProline dehydrogenase / 0.671
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.671
1n9l FMNPutative blue light receptor / 0.670
2ohi FMNType A flavoprotein FprA 1 0.670
2z9d FMNFMN-dependent NADH-azoreductase / 0.670
2fx2 FMNFlavodoxin / 0.668
3f90 FMNFlavodoxin / 0.668
4tmb FMNOld yellow enzyme / 0.668
1wsb FMNFlavodoxin / 0.667
1xyv FMNFlavodoxin / 0.667
3kap FMNFlavodoxin / 0.665
1j9z FMNNADPH--cytochrome P450 reductase / 0.663
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.663
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.660
3n19 FNRXenobiotic reductase / 0.659
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.658
5fx2 FMNFlavodoxin / 0.658
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.657
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.657
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.657
1ahn FMNFlavodoxin 1 / 0.656
1azl FMNFlavodoxin / 0.656
3l5l FMNXenobiotic reductase / 0.656
4jic FMNGTN Reductase / 0.656
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.656
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.655
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.655
1fx1 FMNFlavodoxin / 0.654
4utk FNRXenobiotic reductase / 0.654
1t5b FMNFMN-dependent NADH-azoreductase / 0.653
3f6r FMNFlavodoxin / 0.653
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.653
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.652
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.652
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.651
4fx2 FMNFlavodoxin / 0.650