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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mec 65B Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mec 65BGag-Pol polyprotein 2.7.7.49 1.128
3med 65BGag-Pol polyprotein 2.7.7.49 0.969
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.917
4ig3 T27Gag-Pol polyprotein 2.7.7.49 0.868
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.842
4g1q T27Gag-Pol polyprotein 2.7.7.49 0.829
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.828
3bgr T27Gag-Pol polyprotein 2.7.7.49 0.818
4id5 T27Gag-Pol polyprotein 2.7.7.49 0.806
4kfb T27Gag-Pol polyprotein 2.7.7.49 0.793
5cyq T27Gag-Pol polyprotein 2.7.7.49 0.789
3nbp JGZGag-Pol polyprotein 2.7.7.49 0.764
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3meg T27Gag-Pol polyprotein 2.7.7.49 0.739
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.730
1s6q TPBGag-Pol polyprotein 2.7.7.49 0.693
4qmt H1NSerine/threonine-protein kinase 24 2.7.11.1 0.650