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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m98 E02 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.888
3myq E27Carbonic anhydrase 2 4.2.1.1 0.826
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.811
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.804
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.798
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.798
3sax E50Carbonic anhydrase 2 4.2.1.1 0.798
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.792
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.788
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.788
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.773
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.765
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.759
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.730
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.728
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.723
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.712
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.709
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.708
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.707
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.700
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.697
3mho J43Carbonic anhydrase 2 4.2.1.1 0.691
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.691
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.684
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.684
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.682
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.680
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.680
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.677
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.677
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.676
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.673
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.671
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.670
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.669
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.668
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.667
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.667
4xiw AZMCarbonic anhydrase, alpha type / 0.666
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.665
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.665
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.665
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.665
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.663
4uov AZMCarbonate dehydratase / 0.663
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.662
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.661
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.660
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.660
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.659
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.658
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.658
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.657
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.657
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.656
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.654
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.654
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.652
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.651