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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m31 FAD Endoplasmic oxidoreductin-1 1.8.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 1.250
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 1.181
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 1.060
3qzy FADFAD-linked sulfhydryl oxidase / 0.784
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.708
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.701
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.696
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.693
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.689
1efp FADElectron transfer flavoprotein subunit alpha / 0.675
3ust FADAcMNPV orf92 / 0.674
2q0k FADThioredoxin reductase 1.8.1.9 0.673
5ahk FADAcetolactate synthase II, large subunit / 0.672
5j4e FMNSensory box protein / 0.671
3w5u FADFerredoxin / 0.667
4hhd FMNPhototropin-1 2.7.11.1 0.665
1tde FADThioredoxin reductase 1.8.1.9 0.663
4kuo RBFPutative blue-light photoreceptor / 0.663
1tdf FADThioredoxin reductase 1.8.1.9 0.658
4kuk RBFPutative blue-light photoreceptor / 0.658
4jnq FDAThioredoxin reductase / 0.656
1g28 FMNPHY3 / 0.652