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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m2v COM Methyl-coenzyme M reductase I subunit alpha 2.8.4.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m2v COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.825
5a0y COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.793
5a0y COMMethyl-coenzyme M reductase I subunit beta 2.8.4.1 0.793
3m2r COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.775
3m2r COMMethyl-coenzyme M reductase I subunit beta 2.8.4.1 0.775
3m2u COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.756
3m30 COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.751
3m30 COMMethyl-coenzyme M reductase I subunit beta 2.8.4.1 0.751
3m1v COMMethyl-coenzyme M reductase I subunit alpha 2.8.4.1 0.741
3m1v COMMethyl-coenzyme M reductase I subunit beta 2.8.4.1 0.741
1e6v COMMethyl-coenzyme M reductase I subunit alpha / 0.700
1e6v COMMethyl coenzyme M reductase, beta subunit / 0.700