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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lu1 UD2 UDP-N-acetylglucosamine 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lu1 UD2UDP-N-acetylglucosamine 4-epimerase / 1.559
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 1.105
1sb8 UD2WbpP / 1.048
1sb9 UPGWbpP / 0.892
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 0.837
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.715
4zrn UPGUDP-glucose 4-epimerase, putative / 0.708
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.703
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.690
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.685
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.683
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.674
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.661
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.654
2qdx FADFerredoxin--NADP+ reductase / 0.651
3adp NAILambda-crystallin 1.1.1.45 0.650
3rv4 ADPBiotin carboxylase 6.3.4.14 0.650