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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lcm FAD Putative oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lcm FADPutative oxidoreductase / 1.257
3rpe FADPutative modulator of drug activity / 0.889
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.878
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.809
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.792
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.791
4r81 FMNPredicted NADH dehydrogenase / 0.791
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.785
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.780
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.768
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.766
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.765
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.763
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.761
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.755
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.749
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.735
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.731
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.720
3klb FMNUncharacterized protein / 0.720
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.719
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.705
2b3d FADModulator of drug activity B / 0.704
1t5b FMNFMN-dependent NADH-azoreductase / 0.703
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.698
2z9d FMNFMN-dependent NADH-azoreductase / 0.695
2ohh FMNType A flavoprotein FprA 1 0.694
2ohj FMNType A flavoprotein FprA 1 0.691
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.690
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.687
3n3b FMNProtein NrdI / 0.680
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.680
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.679
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.674
1ofv FMNFlavodoxin / 0.668
1czn FMNFlavodoxin / 0.667
2ohi FMNType A flavoprotein FprA 1 0.664
3tjl FMNNADPH dehydrogenase / 0.664
4m5p FMNNADPH dehydrogenase / 0.664
2g37 FADProline dehydrogenase / 0.661
1akw FMNFlavodoxin / 0.658
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.658
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
4j8p FMNFlavodoxin / 0.657
3n39 FMNProtein NrdI / 0.656
3atz FMNProstaglandin F2a synthase / 0.655
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.653
4df2 FMNNADPH dehydrogenase / 0.653
4e2b FMNDehydrogenase / 0.651
2v5u FMNFlavodoxin / 0.650
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.650
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.650