sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3k9u | ACO | Spermidine N(1)-acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 1.339 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 1.158 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.848 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.827 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.805 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.794 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.793 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.787 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.782 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.779 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.779 | |
| 4gs4 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.776 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.772 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.768 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.768 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.768 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.753 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.751 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.748 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.745 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.741 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.736 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.718 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.718 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.718 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.716 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.716 | |
| 4u9z | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.716 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.714 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.711 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.710 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.706 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.706 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.700 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.699 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.699 | |
| 1pu9 | COA | HAT A1 | / | 0.699 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.698 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.698 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.696 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.696 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.695 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.692 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.691 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.690 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.690 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.687 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.686 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.680 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.680 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.679 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.678 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.678 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.677 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.677 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.677 | |
| 1pua | COA | HAT A1 | / | 0.674 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.674 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.672 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.670 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.670 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.670 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.668 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.668 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.666 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.665 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.664 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.664 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.663 | |
| 1s7n | COA | Acetyl transferase | / | 0.662 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.662 | |
| 4h6z | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.662 | |
| 4cry | ACO | PanD regulatory factor | / | 0.660 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.659 | |
| 3dr8 | ACO | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | / | 0.659 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.658 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.657 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.654 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.653 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.652 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.651 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.650 |