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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jx5 H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.904
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.876
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.876
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.875
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.875
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.875
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.874
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.874
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.872
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.871
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.871
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.870
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.869
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.869
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.869
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.869
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.868
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.867
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.867
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.867
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.866
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.866
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.865
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.865
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.864
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.864
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.863
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.862
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.859
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.858
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.858
3png H4BNitric oxide synthase, brain 1.14.13.39 0.858
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.855
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.855
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.855
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.855
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.854
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.854
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.854
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.853
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.853
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.853
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.853
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.852
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.852
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.852
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.852
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.852
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.852
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.851
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.851
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.851
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.851
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.851
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.851
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.851
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.850
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.848
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.848
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.847
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.846
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.845
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.845
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.844
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.844
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.839
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.839
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.837
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.836
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.835
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.835
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.833
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.831
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.831
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.830
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.818
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.817
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.816
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.815
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.808
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.806
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.806
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.805
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.803
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.801
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.799
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.798
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.792
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.792
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.790
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.790
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.789
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.789
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.787
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.778
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.773
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.771
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.763
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.757
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.743
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.729
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.704
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.700
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.677
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.675
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.669
4gvq N4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 0.667
4e5f 0N7Polymerase acidic protein / 0.660
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.652
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.651