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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jws JI4 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jws JI4Nitric oxide synthase, brain 1.14.13.39 1.078
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.887
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.882
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.875
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.861
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.858
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.845
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.842
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.839
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.824
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.820
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.816
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.815
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.811
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.787
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.786
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.785
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.775
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.775
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.773
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.769
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.769
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.767
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.762
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.758
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.757
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.752
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.750
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.745
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.744
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.742
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.739
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.736
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.732
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.730
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.729
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.726
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.719
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.713
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.709
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.706
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.705
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.703
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.698
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.695
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.693
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.693
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.690
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.685
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.682
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.675
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.673
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.659
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.656
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.653