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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jqc JU2 Pteridine reductase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jqc JU2Pteridine reductase, putative / 0.782
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
4dsj DGTDNA polymerase I / 0.712
4rf9 AGSArginine kinase 2.7.3.3 0.665
2qhx FE1Pteridine reductase 1 1.5.1.33 0.664
1e92 HBIPteridine reductase 1 1.5.1.33 0.657
3af3 GCPPantothenate kinase 2.7.1.33 0.657
4dpg APCLysine--tRNA ligase 6.1.1.6 0.657
1e7w MTXPteridine reductase 1 1.5.1.33 0.655