2.200 Å
X-ray
2000-10-04
Name: | Pteridine reductase 1 |
---|---|
ID: | PTR1_LEIMA |
AC: | Q01782 |
Organism: | Leishmania major |
Reign: | Eukaryota |
TaxID: | 5664 |
EC Number: | 1.5.1.33 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 96 % |
D | 4 % |
B-Factor: | 17.797 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | NAP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.779 | 482.625 |
% Hydrophobic | % Polar |
---|---|
59.44 | 40.56 |
According to VolSite |
HET Code: | HBI |
---|---|
Formula: | C9H13N5O3 |
Molecular weight: | 239.231 g/mol |
DrugBank ID: | DB04400 |
Buried Surface Area: | 68.15 % |
Polar Surface area: | 132.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 5 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-4.65035 | 32.8332 | 64.3355 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N2 | OG | SER- 111 | 2.85 | 163.44 | H-Bond (Ligand Donor) |
C10 | CZ | PHE- 113 | 3.95 | 0 | Hydrophobic |
C11 | CE2 | PHE- 113 | 4.08 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 113 | 3.75 | 0 | Aromatic Face/Face |
C10 | CD2 | LEU- 188 | 4.25 | 0 | Hydrophobic |
C9 | CD2 | LEU- 226 | 3.84 | 0 | Hydrophobic |
C11 | CD1 | LEU- 229 | 3.74 | 0 | Hydrophobic |
N2 | O1A | NAP- 1289 | 3.06 | 132.43 | H-Bond (Ligand Donor) |
N3 | O1A | NAP- 1289 | 2.64 | 156.62 | H-Bond (Ligand Donor) |
C9 | C4N | NAP- 1289 | 3.99 | 0 | Hydrophobic |