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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i0a DBH Neutrophil gelatinase-associated lipocalin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i0a DBHNeutrophil gelatinase-associated lipocalin / 0.860
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2cl5 BIECatechol O-methyltransferase 2.1.1.6 0.700
3ozr OZRCatechol O-methyltransferase 2.1.1.6 0.683
1eir BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.676
3hvk 719Catechol O-methyltransferase 2.1.1.6 0.668
3oe4 610Catechol O-methyltransferase 2.1.1.6 0.668
3a7d FBNCatechol O-methyltransferase 2.1.1.6 0.667
2zvj KOMCatechol O-methyltransferase 2.1.1.6 0.665
1kw9 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.663
5fhq DNCCatechol O-methyltransferase 2.1.1.6 0.662
3mfl DHYProtocatechuate 3,4-dioxygenase alpha chain 1.13.11.3 0.661
3mfl DHYProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.661
1kmy BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.652
5adv DBSEnterochelin uptake periplasmic binding protein / 0.652