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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f7b AG5 Carbonic anhydrase 4 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f7b AG5Carbonic anhydrase 4 4.2.1.1 1.094
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.822
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.693
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.693
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.692
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.689
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.688
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.683
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.681
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.681
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.677
3hku TORCarbonic anhydrase 2 4.2.1.1 0.675
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.672
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.670
3sax E50Carbonic anhydrase 2 4.2.1.1 0.670
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.668
1okn STBCarbonic anhydrase 2 4.2.1.1 0.667
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.667
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.667
3mho J43Carbonic anhydrase 2 4.2.1.1 0.667
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.667
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.666
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.665
4uov AZMCarbonate dehydratase / 0.665
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.664
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.664
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.660
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.660
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.659
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.659
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.659
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.658
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.655
4xiw AZMCarbonic anhydrase, alpha type / 0.655
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.654
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.654
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.651
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.650