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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eei MTM 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eei MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 1.086
1y6r MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.991
4bmz MTAAminodeoxyfutalosine nucleosidase / 0.925
1nc1 MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.908
4wkb TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.891
1zos MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.889
4x24 TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.852
3dp9 BIG5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.807
2qtg MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 3.2.2.9 0.763
3fow IMHPurine nucleoside phosphorylase / 0.735
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.721
1jdv ADNPurine nucleoside phosphorylase / 0.701
1k9s FM1Purine nucleoside phosphorylase DeoD-type / 0.698
1pk9 2FAPurine nucleoside phosphorylase DeoD-type / 0.697
3uaz NOSPurine nucleoside phosphorylase DeoD-type / 0.683
1pr0 NOSPurine nucleoside phosphorylase DeoD-type / 0.682
1pr6 XYAPurine nucleoside phosphorylase DeoD-type / 0.680
1q1g MTIPurine nucleoside phosphorylase / 0.673
2i4t UA2Purine nucleoside phosphorylase, putative / 0.669
3reo SAH(Iso)eugenol O-methyltransferase 2.1.1.146 0.655
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.652