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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e68 AT6 Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.810
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.733
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.731
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.731
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.731
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.727
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.722
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.716
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.714
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.713
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.712
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.709
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.709
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.708
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.708
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.707
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.707
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.706
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.706
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.703
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.702
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.700
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.699
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.698
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.696
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.696
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.695
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.693
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.692
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.691
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.689
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.687
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.687
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.687
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.686
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.682
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.681
1m9j CLWNitric oxide synthase, endothelial 1.14.13.39 0.678
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.676
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.676
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.674
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.673
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.670
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.668
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.667
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.666
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.664
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.663
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.663
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.654
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.651