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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3coz 54H Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3coz 54HPantothenate synthetase 6.3.2.1 1.021
3coy 53HPantothenate synthetase 6.3.2.1 0.961
1n2i PAJPantothenate synthetase 6.3.2.1 0.948
3cow 52HPantothenate synthetase 6.3.2.1 0.930
1n2h PAJPantothenate synthetase 6.3.2.1 0.916
3ag6 PAJPantothenate synthetase / 0.877
2a84 ATPPantothenate synthetase 6.3.2.1 0.788
2x3f APCPantothenate synthetase / 0.782
3iob A4DPantothenate synthetase 6.3.2.1 0.782
1n2g APCPantothenate synthetase 6.3.2.1 0.773
3iod A6DPantothenate synthetase 6.3.2.1 0.750
1n2e APCPantothenate synthetase 6.3.2.1 0.738
5hg0 SAMPantothenate synthetase / 0.694
3ioc A5DPantothenate synthetase 6.3.2.1 0.684
2yy5 WSATryptophan--tRNA ligase 6.1.1.2 0.678
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.678
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.676
1r6t TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.676
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.668
3ioe A7DPantothenate synthetase 6.3.2.1 0.663
3elb C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.660
3kpb SAMUncharacterized protein MJ0100 / 0.655
4k38 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.654
4xsv C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.654
2qjo NADBifunctional NMN adenylyltransferase/Nudix hydrolase 2.7.7.1 0.653
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.651
4i3w NADAldehyde dehydrogenase (NAD+) / 0.651
4k36 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.650