sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bj7 | COA | Diamine acetyltransferase 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 1.327 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.771 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.768 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.768 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.751 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.744 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.743 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.741 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.738 | |
| 1m1d | LYX | HAT A1 | / | 0.737 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.734 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.732 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.732 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.730 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.728 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.726 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.726 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.724 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.721 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.721 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.719 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.718 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.717 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.713 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.712 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.711 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.710 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.709 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.703 | |
| 3r1k | COA | N-acetyltransferase Eis | / | 0.698 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.690 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.689 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.688 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.685 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.683 | |
| 1pua | COA | HAT A1 | / | 0.680 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.679 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.678 | |
| 1kuy | COT | Serotonin N-acetyltransferase | / | 0.674 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.671 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.668 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.668 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.665 | |
| 4psw | COA | Histone acetyltransferase type B catalytic subunit | / | 0.665 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.664 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.663 | |
| 4crz | ACO | PanD regulatory factor | / | 0.661 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.660 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.660 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.658 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.657 | |
| 2wpw | ACO | Orf14 | / | 0.650 |