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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bgr T27 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bgr T27Gag-Pol polyprotein 2.7.7.49 1.073
4kfb T27Gag-Pol polyprotein 2.7.7.49 0.955
4ifv T27Gag-Pol polyprotein 2.7.7.49 0.949
2zd1 T27Gag-Pol polyprotein 2.7.7.49 0.922
5cyq T27Gag-Pol polyprotein 2.7.7.49 0.918
4g1q T27Gag-Pol polyprotein 2.7.7.49 0.905
4ig3 T27Gag-Pol polyprotein 2.7.7.49 0.885
4id5 T27Gag-Pol polyprotein 2.7.7.49 0.861
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.844
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.821
3mec 65BGag-Pol polyprotein 2.7.7.49 0.818
3med 65BGag-Pol polyprotein 2.7.7.49 0.812
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.798
3mee T27Gag-Pol polyprotein 2.7.7.49 0.770
1s6q TPBGag-Pol polyprotein 2.7.7.49 0.761
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2ze2 T27Gag-Pol polyprotein 2.7.7.49 0.743
3nbp JGZGag-Pol polyprotein 2.7.7.49 0.689
4i2p G73Gag-Pol polyprotein 2.7.7.49 0.677
1s9e ADBGag-Pol polyprotein 2.7.7.49 0.670
5bvw 1N1Epithelial discoidin domain-containing receptor 1 2.7.10.1 0.657
2rf2 MRXGag-Pol polyprotein 2.7.7.49 0.654