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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b3p H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.893
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.892
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.891
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.891
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.888
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.888
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.884
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.878
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.876
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.875
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.874
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.874
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.874
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.874
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.874
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.874
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.873
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.873
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.873
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.873
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.873
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.873
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.873
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.872
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.871
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.871
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.870
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.870
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.870
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.870
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.869
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.868
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.867
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.866
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.866
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.866
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.864
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.857
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.856
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.856
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.855
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.855
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.855
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.855
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.855
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.854
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.854
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.854
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.854
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.854
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.854
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.853
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.853
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.853
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.852
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.851
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.851
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.851
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.850
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.850
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.850
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.850
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.850
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.849
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.849
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.848
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.848
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.848
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.847
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.846
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.846
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.845
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.841
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.841
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.841
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.840
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.840
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.839
3png H4BNitric oxide synthase, brain 1.14.13.39 0.837
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.836
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.836
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.835
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.833
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.829
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.828
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.823
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.823
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.822
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.820
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.817
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.813
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.811
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.810
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.796
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.796
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.782
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.776
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.775
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.763
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.719
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.714
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.697
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.690
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.688
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.685
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.685
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.675
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.674
3ej8 H4BNitric oxide synthase, inducible 1.14.13.39 0.674
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.671
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.662
4e5f 0N7Polymerase acidic protein / 0.660