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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b3n H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.933
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.927
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.925
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.919
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.913
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.912
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.911
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.911
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.910
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.910
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.910
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.910
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.910
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.909
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.909
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.909
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.909
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.908
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.908
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.907
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.906
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.905
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.905
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.905
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.905
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.902
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.902
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.902
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.896
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.894
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.893
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.892
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.891
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.891
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.891
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.891
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.890
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.889
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.889
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.888
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.888
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.888
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.887
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.887
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.887
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.886
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.885
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.885
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.883
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.882
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.882
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.881
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.881
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.878
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.876
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.875
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.875
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.874
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.873
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.873
3png H4BNitric oxide synthase, brain 1.14.13.39 0.872
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.872
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.871
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.868
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.867
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.862
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.858
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.857
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.855
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.854
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.852
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.852
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.851
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.849
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.846
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.843
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.842
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.840
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.839
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.839
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.823
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.821
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.818
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.817
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.816
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.799
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.799
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.795
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.794
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.793
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.777
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.774
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.771
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.766
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.761
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.757
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.742
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.739
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.734
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.723
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.723
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.720
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.704
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.704
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.703
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.675
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.665
4e5f 0N7Polymerase acidic protein / 0.660
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.659
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.658
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.650