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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3anl SYC 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3anl SYC1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.945
3zhx FM61-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.767
3r0i C0K1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.765
3anm SYD1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.732
3zhz FM71-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.721
4kp7 1UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.691
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.661
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.655
3a1e ACPProbable copper-exporting P-type ATPase A 3.6.3.54 0.655
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.654
4ask K0ILysine-specific demethylase 6B 1.14.11 0.650