1.950 Å
X-ray
2009-03-31
| Name: | Probable copper-exporting P-type ATPase A |
|---|---|
| ID: | COPA_ARCFU |
| AC: | O29777 |
| Organism: | Archaeoglobus fulgidus |
| Reign: | Archaea |
| TaxID: | 224325 |
| EC Number: | 3.6.3.54 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 45.505 |
|---|---|
| Number of residues: | 42 |
| Including | |
| Standard Amino Acids: | 39 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.095 | 1225.125 |
| % Hydrophobic | % Polar |
|---|---|
| 42.98 | 57.02 |
| According to VolSite | |

| HET Code: | ACP |
|---|---|
| Formula: | C11H14N5O12P3 |
| Molecular weight: | 501.176 g/mol |
| DrugBank ID: | DB03909 |
| Buried Surface Area: | 71.37 % |
| Polar Surface area: | 310.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 78.0185 | 11.6993 | 43.443 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2G | N | THR- 426 | 3.28 | 137.29 | H-Bond (Protein Donor) |
| O2G | OG1 | THR- 426 | 3.47 | 125.26 | H-Bond (Protein Donor) |
| C3B | CG2 | THR- 426 | 3.61 | 0 | Hydrophobic |
| N6 | OE1 | GLU- 457 | 2.98 | 156.25 | H-Bond (Ligand Donor) |
| N1 | OE2 | GLU- 457 | 2.57 | 160.42 | H-Bond (Ligand Donor) |
| N1 | OE1 | GLU- 457 | 3.32 | 138.9 | H-Bond (Ligand Donor) |
| O2A | NE2 | GLN- 462 | 3 | 174.47 | H-Bond (Protein Donor) |
| C2' | CD1 | ILE- 464 | 3.69 | 0 | Hydrophobic |
| O2' | ND2 | ASN- 502 | 3.31 | 123.86 | H-Bond (Protein Donor) |
| O2G | OG1 | THR- 572 | 2.51 | 162.85 | H-Bond (Protein Donor) |
| O3G | N | GLY- 573 | 2.66 | 148.63 | H-Bond (Protein Donor) |
| O3' | OD2 | ASP- 574 | 2.9 | 149.2 | H-Bond (Ligand Donor) |
| O1G | NZ | LYS- 600 | 3.62 | 0 | Ionic (Protein Cationic) |
| O3G | NZ | LYS- 600 | 2.8 | 0 | Ionic (Protein Cationic) |
| O2B | NZ | LYS- 600 | 3.79 | 0 | Ionic (Protein Cationic) |
| O3G | NZ | LYS- 600 | 2.8 | 131.95 | H-Bond (Protein Donor) |
| O1G | MG | MG- 998 | 2.26 | 0 | Metal Acceptor |