1.950 Å
X-ray
2009-03-31
Name: | Probable copper-exporting P-type ATPase A |
---|---|
ID: | COPA_ARCFU |
AC: | O29777 |
Organism: | Archaeoglobus fulgidus |
Reign: | Archaea |
TaxID: | 224325 |
EC Number: | 3.6.3.54 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 45.505 |
---|---|
Number of residues: | 42 |
Including | |
Standard Amino Acids: | 39 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
1.095 | 1225.125 |
% Hydrophobic | % Polar |
---|---|
42.98 | 57.02 |
According to VolSite |
HET Code: | ACP |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 71.37 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
78.0185 | 11.6993 | 43.443 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2G | N | THR- 426 | 3.28 | 137.29 | H-Bond (Protein Donor) |
O2G | OG1 | THR- 426 | 3.47 | 125.26 | H-Bond (Protein Donor) |
C3B | CG2 | THR- 426 | 3.61 | 0 | Hydrophobic |
N6 | OE1 | GLU- 457 | 2.98 | 156.25 | H-Bond (Ligand Donor) |
N1 | OE2 | GLU- 457 | 2.57 | 160.42 | H-Bond (Ligand Donor) |
N1 | OE1 | GLU- 457 | 3.32 | 138.9 | H-Bond (Ligand Donor) |
O2A | NE2 | GLN- 462 | 3 | 174.47 | H-Bond (Protein Donor) |
C2' | CD1 | ILE- 464 | 3.69 | 0 | Hydrophobic |
O2' | ND2 | ASN- 502 | 3.31 | 123.86 | H-Bond (Protein Donor) |
O2G | OG1 | THR- 572 | 2.51 | 162.85 | H-Bond (Protein Donor) |
O3G | N | GLY- 573 | 2.66 | 148.63 | H-Bond (Protein Donor) |
O3' | OD2 | ASP- 574 | 2.9 | 149.2 | H-Bond (Ligand Donor) |
O1G | NZ | LYS- 600 | 3.62 | 0 | Ionic (Protein Cationic) |
O3G | NZ | LYS- 600 | 2.8 | 0 | Ionic (Protein Cationic) |
O2B | NZ | LYS- 600 | 3.79 | 0 | Ionic (Protein Cationic) |
O3G | NZ | LYS- 600 | 2.8 | 131.95 | H-Bond (Protein Donor) |
O1G | MG | MG- 998 | 2.26 | 0 | Metal Acceptor |