Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2zgx | 29U | Prothrombin | 3.4.21.5 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
2zgx | 29U | Prothrombin | 3.4.21.5 | 1.005 | |
2zi2 | 24U | Prothrombin | 3.4.21.5 | 0.942 | |
2zda | 32U | Prothrombin | 3.4.21.5 | 0.940 | |
2zhq | 27U | Prothrombin | 3.4.21.5 | 0.903 | |
2zhf | 49U | Prothrombin | 3.4.21.5 | 0.886 | |
2zg0 | 50U | Prothrombin | 3.4.21.5 | 0.885 | |
2zfq | 45U | Prothrombin | 3.4.21.5 | 0.876 | |
2zfr | 46U | Prothrombin | 3.4.21.5 | 0.871 | |
2ziq | 26U | Prothrombin | 3.4.21.5 | 0.850 | |
1riw | OSC | Prothrombin | 3.4.21.5 | 0.841 | |
4ban | M6S | Prothrombin | 3.4.21.5 | 0.831 | |
4bao | MVF | Prothrombin | 3.4.21.5 | 0.831 | |
4bam | MM9 | Prothrombin | 3.4.21.5 | 0.822 | |
2zdv | 37U | Prothrombin | 3.4.21.5 | 0.821 | |
2gde | SN3 | Prothrombin | 3.4.21.5 | 0.819 | |
2znk | 31U | Prothrombin | 3.4.21.5 | 0.818 | |
1ypl | RA8 | Prothrombin | 3.4.21.5 | 0.812 | |
1ypm | RA4 | Prothrombin | 3.4.21.5 | 0.811 | |
1k21 | IGN | Prothrombin | 3.4.21.5 | 0.809 | |
3hat | GLY_VAL_ARG_RNG | Prothrombin | 3.4.21.5 | 0.807 | |
2zhe | 13U | Prothrombin | 3.4.21.5 | 0.805 | |
3qwc | 98P | Prothrombin | 3.4.21.5 | 0.805 | |
3biv | 11U | Prothrombin | 3.4.21.5 | 0.802 | |
2v3h | I25 | Prothrombin | 3.4.21.5 | 0.790 | |
2zff | 53U | Prothrombin | 3.4.21.5 | 0.790 | |
1wtg | 3BP | Coagulation factor VII | 3.4.21.21 | 0.788 | |
1k22 | MEL | Prothrombin | 3.4.21.5 | 0.787 | |
2zf0 | 51U | Prothrombin | 3.4.21.5 | 0.785 | |
3p17 | 99P | Prothrombin | 3.4.21.5 | 0.776 | |
4baq | M4Z | Prothrombin | 3.4.21.5 | 0.769 | |
2zc9 | 22U | Prothrombin | 3.4.21.5 | 0.768 | |
1c4u | IH1 | Prothrombin | 3.4.21.5 | 0.765 | |
1ypk | CCR | Prothrombin | 3.4.21.5 | 0.765 | |
1c4v | IH2 | Prothrombin | 3.4.21.5 | 0.761 | |
1ae8 | AZL | Prothrombin | 3.4.21.5 | 0.757 | |
4ayy | 9MX | Prothrombin | 3.4.21.5 | 0.754 | |
3qto | 10P | Prothrombin | 3.4.21.5 | 0.753 | |
3utu | 1TS | Prothrombin | 3.4.21.5 | 0.750 | |
4bak | M67 | Prothrombin | 3.4.21.5 | 0.749 | |
1ype | UIP | Prothrombin | 3.4.21.5 | 0.747 | |
2cn0 | F25 | Prothrombin | 3.4.21.5 | 0.747 | |
3dhk | 23U | Prothrombin | 3.4.21.5 | 0.747 | |
3qtv | 06P | Prothrombin | 3.4.21.5 | 0.746 | |
1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
1lpk | CBB | Coagulation factor X | 3.4.21.6 | 0.744 | |
2zfp | 19U | Prothrombin | 3.4.21.5 | 0.744 | |
4e5i | 0N9 | Polymerase acidic protein | / | 0.744 | |
4bah | MEL | Prothrombin | 3.4.21.5 | 0.743 | |
3eq0 | 2TS | Prothrombin | 3.4.21.5 | 0.742 | |
4e7r | 0NW | Prothrombin | 3.4.21.5 | 0.742 | |
1d4p | BPP | Prothrombin | 3.4.21.5 | 0.741 | |
2cf9 | 348 | Prothrombin | 3.4.21.5 | 0.739 | |
3biu | 10U | Prothrombin | 3.4.21.5 | 0.739 | |
4ayv | 9MQ | Prothrombin | 3.4.21.5 | 0.736 | |
1wqv | PSM | Coagulation factor VII | 3.4.21.21 | 0.734 | |
1ypg | UIR | Prothrombin | 3.4.21.5 | 0.730 | |
2anm | CDO | Prothrombin | 3.4.21.5 | 0.730 | |
4ax9 | N5N | Prothrombin | 3.4.21.5 | 0.728 | |
1c5n | ESI | Prothrombin | 3.4.21.5 | 0.720 | |
1o0d | 163 | Prothrombin | 3.4.21.5 | 0.720 | |
3plp | BBA | Cationic trypsin | 3.4.21.4 | 0.720 | |
1ta2 | 176 | Prothrombin | 3.4.21.5 | 0.719 | |
1zsk | 421 | Coagulation factor XI | 3.4.21.27 | 0.718 | |
4az2 | 9MU | Prothrombin | 3.4.21.5 | 0.715 | |
1nt1 | T76 | Prothrombin | 3.4.21.5 | 0.713 | |
1ta6 | 177 | Prothrombin | 3.4.21.5 | 0.713 | |
2cf8 | ESH | Prothrombin | 3.4.21.5 | 0.712 | |
2zp0 | PI0 | Coagulation factor VII | 3.4.21.21 | 0.712 | |
1wv7 | 5PI | Coagulation factor VII | 3.4.21.21 | 0.707 | |
1ghv | 120 | Prothrombin | 3.4.21.5 | 0.705 | |
1xm1 | GAH | Prothrombin | 3.4.21.5 | 0.702 | |
1ypj | UIB | Prothrombin | 3.4.21.5 | 0.702 | |
1vja | 7IN | Urokinase-type plasminogen activator | 3.4.21.73 | 0.700 | |
1vzq | SHY | Prothrombin | 3.4.21.5 | 0.688 | |
1c1u | BAI | Prothrombin | 3.4.21.5 | 0.687 | |
2zgb | 21U | Prothrombin | 3.4.21.5 | 0.687 | |
1zrb | 062 | Prothrombin | 3.4.21.5 | 0.686 | |
2a2x | NA9 | Prothrombin | 3.4.21.5 | 0.686 | |
3f68 | 91U | Prothrombin | 3.4.21.5 | 0.686 | |
2zhw | 12U | Prothrombin | 3.4.21.5 | 0.684 | |
1d9i | 00P | Prothrombin | 3.4.21.5 | 0.682 | |
2c4f | GIL | Coagulation factor VII | 3.4.21.21 | 0.682 | |
3dux | 64U | Prothrombin | 3.4.21.5 | 0.676 | |
5cmx | 0G6 | Prothrombin | 3.4.21.5 | 0.673 | |
1afe | ALZ | Prothrombin | 3.4.21.5 | 0.671 | |
1sl3 | 170 | Prothrombin | 3.4.21.5 | 0.670 | |
7kme | ACE_0BN_CHG_PRR | Prothrombin | 3.4.21.5 | 0.669 | |
2pks | G44 | Prothrombin | 3.4.21.5 | 0.667 | |
1o2g | 696 | Prothrombin | 3.4.21.5 | 0.666 | |
3qdz | PRO_ALA_PRO_ARG | Prothrombin | 3.4.21.5 | 0.665 | |
1uvs | I11 | Prothrombin | 3.4.21.5 | 0.664 | |
2bok | 784 | Coagulation factor X | 3.4.21.6 | 0.663 | |
4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
1lqd | CMI | Coagulation factor X | 3.4.21.6 | 0.658 | |
1owi | 426 | Urokinase-type plasminogen activator | 3.4.21.73 | 0.658 | |
4dju | 0KK | Beta-secretase 1 | 3.4.23.46 | 0.650 | |
4jpc | 1M6 | Beta-secretase 1 | 3.4.23.46 | 0.650 |