Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zc9 22U Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zc9 22UProthrombin 3.4.21.5 0.974
3dhk 23UProthrombin 3.4.21.5 0.944
2zff 53UProthrombin 3.4.21.5 0.926
2zdv 37UProthrombin 3.4.21.5 0.925
2zf0 51UProthrombin 3.4.21.5 0.915
3dux 64UProthrombin 3.4.21.5 0.861
3qwc 98PProthrombin 3.4.21.5 0.861
3qtv 06PProthrombin 3.4.21.5 0.857
1ta2 176Prothrombin 3.4.21.5 0.848
2zda 32UProthrombin 3.4.21.5 0.839
1zrb 062Prothrombin 3.4.21.5 0.833
2zfp 19UProthrombin 3.4.21.5 0.827
3p17 99PProthrombin 3.4.21.5 0.825
1ta6 177Prothrombin 3.4.21.5 0.812
3eq0 2TSProthrombin 3.4.21.5 0.811
3qto 10PProthrombin 3.4.21.5 0.806
2zgb 21UProthrombin 3.4.21.5 0.785
3f68 91UProthrombin 3.4.21.5 0.783
1sl3 170Prothrombin 3.4.21.5 0.780
2zhq 27UProthrombin 3.4.21.5 0.770
2zgx 29UProthrombin 3.4.21.5 0.768
1riw OSCProthrombin 3.4.21.5 0.762
1ae8 AZLProthrombin 3.4.21.5 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2zg0 50UProthrombin 3.4.21.5 0.739
1nt1 T76Prothrombin 3.4.21.5 0.726
4bam MM9Prothrombin 3.4.21.5 0.724
1ypl RA8Prothrombin 3.4.21.5 0.718
2zfq 45UProthrombin 3.4.21.5 0.718
4ban M6SProthrombin 3.4.21.5 0.714
1k21 IGNProthrombin 3.4.21.5 0.713
3utu 1TSProthrombin 3.4.21.5 0.711
4bah MELProthrombin 3.4.21.5 0.709
2znk 31UProthrombin 3.4.21.5 0.707
1k22 MELProthrombin 3.4.21.5 0.703
4bao MVFProthrombin 3.4.21.5 0.702
2zi2 24UProthrombin 3.4.21.5 0.699
5cmx 0G6Prothrombin 3.4.21.5 0.699
1z71 L17Prothrombin 3.4.21.5 0.691
1xm1 GAHProthrombin 3.4.21.5 0.689
2zhf 49UProthrombin 3.4.21.5 0.687
2ziq 26UProthrombin 3.4.21.5 0.687
1nm6 L86Prothrombin 3.4.21.5 0.676
1o0d 163Prothrombin 3.4.21.5 0.676
2anm CDOProthrombin 3.4.21.5 0.673
1mue CDDProthrombin 3.4.21.5 0.670
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.669
1mu8 CDBProthrombin 3.4.21.5 0.668
4bak M67Prothrombin 3.4.21.5 0.664
2zfr 46UProthrombin 3.4.21.5 0.661
1ypm RA4Prothrombin 3.4.21.5 0.656
2bxt C2DProthrombin 3.4.21.5 0.656
2cf8 ESHProthrombin 3.4.21.5 0.654
3c1k T15Prothrombin 3.4.21.5 0.654
1afe ALZProthrombin 3.4.21.5 0.653
1c4v IH2Prothrombin 3.4.21.5 0.650