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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z9d FMN FMN-dependent NADH-azoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z9d FMNFMN-dependent NADH-azoreductase / 1.141
1t5b FMNFMN-dependent NADH-azoreductase / 0.924
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.814
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.792
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.771
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.763
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.762
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.755
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.738
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.735
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.735
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.732
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.730
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.728
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.723
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.719
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.717
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.717
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.704
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.703
4r81 FMNPredicted NADH dehydrogenase / 0.702
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.700
4hs4 FMNChromate reductase / 0.699
3rpe FADPutative modulator of drug activity / 0.698
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.695
3lcm FADPutative oxidoreductase / 0.695
3klb FMNUncharacterized protein / 0.693
4j8p FMNFlavodoxin / 0.692
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.690
2bn4 FMNNADPH--cytochrome P450 reductase / 0.687
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.687
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.685
3w77 FMNFMN-dependent NADH-azoreductase / 0.684
4jic FMNGTN Reductase / 0.684
1vhn FMNtRNA-dihydrouridine synthase / 0.683
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.683
1vyr FMNPentaerythritol tetranitrate reductase / 0.681
3l5l FMNXenobiotic reductase / 0.681
3l67 FMNXenobiotic reductase / 0.681
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.681
3p84 FMNPentaerythritol tetranitrate reductase / 0.680
3p8j FMNPentaerythritol tetranitrate reductase / 0.677
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.677
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.676
4tmb FMNOld yellow enzyme / 0.676
1ych FMNNitric oxide reductase 1 0.675
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.674
4df2 FMNNADPH dehydrogenase / 0.674
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.674
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.673
2h8x FMNXenA / 0.673
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.672
5xr8 FMNCannabinoid receptor 1 / 0.671
1z48 FMNNADPH dehydrogenase / 0.670
3n19 FNRXenobiotic reductase / 0.670
3n3a FMNProtein NrdI / 0.670
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.669
2bf4 FMNNADPH--cytochrome P450 reductase / 0.669
3aty FMNProstaglandin F2a synthase / 0.669
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.669
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.669
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.668
1ycf FMNNitric oxide reductase 1 0.668
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.668
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.667
2fcr FMNFlavodoxin / 0.665
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.665
3b03 VNRIsopentenyl-diphosphate delta-isomerase / 0.663
3n39 FMNProtein NrdI / 0.663
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.663
5tgz FMNCannabinoid receptor 1 / 0.663
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.662
3hf3 FMNChromate reductase / 0.662
3gka FMNN-ethylmaleimide reductase / 0.659
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.658
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.658
1ycg FMNNitric oxide reductase 1 0.657
1gwj FMNMorphinone reductase / 0.656
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
3n3b FMNProtein NrdI / 0.654
3tjl FMNNADPH dehydrogenase / 0.653
4tmc FMNOld yellow enzyme / 0.653
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.652
1h51 FMNPentaerythritol tetranitrate reductase / 0.650