Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y6p CTP 3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 1.306
3pkp DTPGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.755
3pkq DGTGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.699
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.696
1id0 ANPSensor protein PhoQ 2.7.13.3 0.688
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.684
3mvy BHZNickel-binding periplasmic protein / 0.679
3n0y APCAdenylate cyclase 2 / 0.678
1xje TTPVitamin B12-dependent ribonucleotide reductase / 0.677
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.673
4u0s ADPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.673
3mvz BHNNickel-binding periplasmic protein / 0.671
4nu0 AP5Adenylate kinase / 0.671
2zev B71Geranylgeranyl pyrophosphate synthase / 0.670
3m0e ATPTranscriptional regulator (NtrC family) / 0.670
3dkv AP5Adenylate kinase / 0.668
1mb9 ATPCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.666
4dxj 0M9Farnesyl pyrophosphate synthase / 0.665
4mkf AP5Adenylate kinase / 0.665
4tyq AP5Adenylate kinase / 0.664
3dl0 AP5Adenylate kinase / 0.663
2aky AP5Adenylate kinase / 0.661
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.660
3aky AP5Adenylate kinase / 0.660
1n9n FMNPutative blue light receptor / 0.659
2idx ATPCob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial 2.5.1.17 0.656
4ajo 88NL-lactate dehydrogenase A chain 1.1.1.27 0.655
4x2d ATPFic family protein putative filamentation induced by cAMP protein / 0.655
2oap ANPType II secretion system protein (GspE-2) / 0.654
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.654
2a41 ATPActin, alpha skeletal muscle / 0.653
2eu8 AP5Adenylate kinase / 0.653
1p3j AP5Adenylate kinase / 0.652
4dwb 0M7Farnesyl pyrophosphate synthase / 0.652
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.650