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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w06 FRV Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.996
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.771
2xmy CDKCyclin-dependent kinase 2 2.7.11.22 0.763
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.747
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.736
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.730
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.730
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.727
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.725
1pxm CK5Cyclin-dependent kinase 2 2.7.11.22 0.723
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.718
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.713
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.709
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.709
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.708
3sw4 18KCyclin-dependent kinase 2 2.7.11.22 0.707
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.706
1pxp CK8Cyclin-dependent kinase 2 2.7.11.22 0.704
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.703
3sw7 19KCyclin-dependent kinase 2 2.7.11.22 0.700
1pxo CK7Cyclin-dependent kinase 2 2.7.11.22 0.699
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.699
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.699
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.697
3nux 3NVCyclin-dependent kinase 6 2.7.11.22 0.695
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.693
4fko 20KCyclin-dependent kinase 2 2.7.11.22 0.691
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.687
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.681
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.680
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.678
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.676
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.675
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.674
2w17 I19Cyclin-dependent kinase 2 2.7.11.22 0.668
4ek8 16KCyclin-dependent kinase 2 2.7.11.22 0.667
1oiq HDUCyclin-dependent kinase 2 2.7.11.22 0.665
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.665
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.659
4ez5 0RSCyclin-dependent kinase 6 2.7.11.22 0.659
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.658
3unj 0BXCyclin-dependent kinase 2 2.7.11.22 0.657
1oir HDYCyclin-dependent kinase 2 2.7.11.22 0.656
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.656
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.656
2g2h P16Tyrosine-protein kinase ABL1 2.7.10.2 0.655
2vv9 IM9Cyclin-dependent kinase 2 2.7.11.22 0.655
3unk 0BYCyclin-dependent kinase 2 2.7.11.22 0.655
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.653
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.653
4c4g 7RODual specificity protein kinase TTK 2.7.12.1 0.652
4bcq TJFCyclin-dependent kinase 2 2.7.11.22 0.651
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.651