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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vtq LZA Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.948
2vu3 LZECyclin-dependent kinase 2 2.7.11.22 0.850
2vtt LZDCyclin-dependent kinase 2 2.7.11.22 0.844
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.740
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.706
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.687
1pye PM1Cyclin-dependent kinase 2 2.7.11.22 0.682
2vts LZCCyclin-dependent kinase 2 2.7.11.22 0.678
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.677
3lfn A27Cyclin-dependent kinase 2 2.7.11.22 0.676
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.674
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.671
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.669
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.669
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.669
2vtr LZBCyclin-dependent kinase 2 2.7.11.22 0.666
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.665
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.664
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.660
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.659
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.657
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 0.656