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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vto LZ8 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.990
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.749
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.748
2vtt LZDCyclin-dependent kinase 2 2.7.11.22 0.744
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.733
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.691
2vu3 LZECyclin-dependent kinase 2 2.7.11.22 0.689
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.688
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.686
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.686
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.683
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.676
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.675
3elj GS7Mitogen-activated protein kinase 8 2.7.11.24 0.666
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.664
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.664
2r3i SCFCyclin-dependent kinase 2 2.7.11.22 0.663
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.660
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.658
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.654
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.653
2c4g 514Cyclin-dependent kinase 2 2.7.11.22 0.653
2vtr LZBCyclin-dependent kinase 2 2.7.11.22 0.651
2w1h L0FCyclin-dependent kinase 2 2.7.11.22 0.651
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.651
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.651
1pye PM1Cyclin-dependent kinase 2 2.7.11.22 0.650
3qru X19Cyclin-dependent kinase 2 2.7.11.22 0.650