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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vqb NAP Putative flavin-containing monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vqb NAPPutative flavin-containing monooxygenase / 1.270
2vq7 NAPPutative flavin-containing monooxygenase / 1.159
2xvh NAPPutative flavin-containing monooxygenase / 1.004
2xlp NAPPutative flavin-containing monooxygenase / 0.910
2xlt NA0Putative flavin-containing monooxygenase / 0.832
2xlr NAPPutative flavin-containing monooxygenase / 0.810
4b64 NAPL-ornithine N(5)-monooxygenase / 0.774
2xlu NA7Putative flavin-containing monooxygenase / 0.767
2xls NAPPutative flavin-containing monooxygenase / 0.750
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.743
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.731
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.719
2gv8 NDPThiol-specific monooxygenase 1.14.13 0.718
4b68 NAPL-ornithine N(5)-monooxygenase / 0.717
3up4 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.710
3s5w NAPL-ornithine N(5)-monooxygenase / 0.707
4b63 NAPL-ornithine N(5)-monooxygenase / 0.693
4b67 NAPL-ornithine N(5)-monooxygenase / 0.693
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.673
3up5 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.662
4b65 NDPL-ornithine N(5)-monooxygenase / 0.659
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.656
3gwd NAPCyclohexanone monooxygenase / 0.655
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.652
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.651