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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v5v FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v5v FMNFlavodoxin / 1.126
3esz FMNFlavodoxin / 1.031
3esy FMNFlavodoxin / 0.978
1czn FMNFlavodoxin / 0.915
2v5u FMNFlavodoxin / 0.910
1ofv FMNFlavodoxin / 0.903
1ahn FMNFlavodoxin 1 / 0.869
1azl FMNFlavodoxin / 0.853
1akw FMNFlavodoxin / 0.843
1akr FMNFlavodoxin / 0.832
1yob FMNFlavodoxin 2 / 0.828
5tgz FMNCannabinoid receptor 1 / 0.823
2fx2 FMNFlavodoxin / 0.822
1wsb FMNFlavodoxin / 0.820
1j8q FMNFlavodoxin / 0.806
2fcr FMNFlavodoxin / 0.805
1c7f FMNFlavodoxin / 0.800
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.796
1aku FMNFlavodoxin / 0.795
1fue FMNFlavodoxin / 0.792
4oxx FMNCindoxin / 0.774
1j9g FMNFlavodoxin / 0.772
1xyv FMNFlavodoxin / 0.765
3f6r FMNFlavodoxin / 0.762
5xra FMNCannabinoid receptor 1 / 0.761
3f6s FMNFlavodoxin / 0.750
1fx1 FMNFlavodoxin / 0.742
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.741
4fx2 FMNFlavodoxin / 0.740
2w5u FMNFlavodoxin / 0.737
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.732
5fx2 FMNFlavodoxin / 0.728
3f90 FMNFlavodoxin / 0.723
3n3b FMNProtein NrdI / 0.722
4yao FMNNADPH--cytochrome P450 reductase / 0.722
2bf4 FMNNADPH--cytochrome P450 reductase / 0.718
1amo FMNNADPH--cytochrome P450 reductase / 0.716
2ohh FMNType A flavoprotein FprA 1 0.714
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.713
1xyy FMNFlavodoxin / 0.705
3n39 FMNProtein NrdI / 0.704
4bmp FMNProtein NrdI / 0.703
2ohi FMNType A flavoprotein FprA 1 0.702
5xr8 FMNCannabinoid receptor 1 / 0.701
1ych FMNNitric oxide reductase 1 0.697
1ycf FMNNitric oxide reductase 1 0.694
4bmo FMNProtein NrdI / 0.692
3n3a FMNProtein NrdI / 0.691
2ohj FMNType A flavoprotein FprA 1 0.688
1ja1 FMNNADPH--cytochrome P450 reductase / 0.686
3qfr FMNNADPH--cytochrome P450 reductase / 0.686
4j8p FMNFlavodoxin / 0.686
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.686
3ojx FMNNADPH--cytochrome P450 reductase / 0.685
1ycg FMNNitric oxide reductase 1 0.682
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.680
4y7c FMNNADPH--cytochrome P450 reductase / 0.679
1ja0 FMNNADPH--cytochrome P450 reductase / 0.678
2q9u FMNA-type flavoprotein / 0.678
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.675
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.672
3qe2 FMNNADPH--cytochrome P450 reductase / 0.671
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.670
3ojw FMNNADPH--cytochrome P450 reductase / 0.660
1j9z FMNNADPH--cytochrome P450 reductase / 0.658
2mok FMNFlavodoxin 1 / 0.657
3kap FMNFlavodoxin / 0.657
2mt9 FMNFlavodoxin 2 / 0.656
3e4v FMNUncharacterized protein / 0.655
1bu5 RBFFlavodoxin / 0.653
3rpe FADPutative modulator of drug activity / 0.653
3klb FMNUncharacterized protein / 0.650