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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v59 LZK Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v59 LZKBiotin carboxylase 6.3.4.14 0.898
2v58 LZJBiotin carboxylase 6.3.4.14 0.760
2v5a LZLBiotin carboxylase 6.3.4.14 0.758
2w71 L23Biotin carboxylase 6.3.4.14 0.702
2w6p OA4Biotin carboxylase 6.3.4.14 0.663