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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v18 FMN Dodecin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v18 FMNDodecin / 1.056
2vxa RBFDodecin / 0.862
2vyx FMNDodecin / 0.799
2v19 FMNDodecin / 0.795
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.707
4jic FMNGTN Reductase / 0.702
3gka FMNN-ethylmaleimide reductase / 0.699
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.697
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.688
2pd8 FADVivid PAS protein VVD / 0.686
3aty FMNProstaglandin F2a synthase / 0.683
2z6d FMNPhototropin-2 2.7.11.1 0.682
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.678
2bkj FMNNADPH-flavin oxidoreductase / 0.676
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.676
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.674
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.674
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.673
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.672
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.671
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.669
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.669
3r7k FDAProbable acyl CoA dehydrogenase / 0.669
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.669
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.669
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.668
5j4e FMNSensory box protein / 0.666
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.664
3d72 FADVivid PAS protein VVD / 0.664
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.663
4kuo RBFPutative blue-light photoreceptor / 0.658
5j3w FMNSensory box protein / 0.658
2eba FADPutative glutaryl-CoA dehydrogenase / 0.657
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.657
2abb FMNPentaerythritol tetranitrate reductase / 0.656
3p62 FMNPentaerythritol tetranitrate reductase / 0.656
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.655
1vyr FMNPentaerythritol tetranitrate reductase / 0.654
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.653
4m9a FDAAcyl-CoA dehydrogenase / 0.653
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.652
3owa FADAcyl-CoA dehydrogenase / 0.650