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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uyq SAM Putative S-adenosyl-L-methionine-dependent methyltransferase ML2640 2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uyq SAMPutative S-adenosyl-L-methionine-dependent methyltransferase ML2640 2.1.1 0.771
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4blt APCNTPase P4 / 0.665
2b82 ADNClass B acid phosphatase 3.1.3.2 0.658
1sx4 ADP60 kDa chaperonin / 0.655
3ou2 SAHSAM-dependent methyltransferase / 0.655
5e9w SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.654
3tlj SAHUncharacterized protein / 0.651