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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r3r 6SC Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.822
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.713
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.709
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.705
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.695
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.693
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.692
3r8p Z46Cyclin-dependent kinase 2 2.7.11.22 0.692
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.690
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.687
2r3p 3SCCyclin-dependent kinase 2 2.7.11.22 0.682
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.681
4kd1 1QKCyclin-dependent kinase 2 2.7.11.22 0.678
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.672
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.669
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.667
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.665
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.661
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.661
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.660
4erk OLOMitogen-activated protein kinase 1 2.7.11.24 0.659
3qql X03Cyclin-dependent kinase 2 2.7.11.22 0.658
2b55 D31Cyclin-dependent kinase 2 2.7.11.22 0.657
3ddp RC8Cyclin-dependent kinase 2 2.7.11.22 0.657
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.656
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.655
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.655
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.655
1gii 1PUCyclin-dependent kinase 2 2.7.11.22 0.654
3ql8 X01Cyclin-dependent kinase 2 2.7.11.22 0.654
3qru X19Cyclin-dependent kinase 2 2.7.11.22 0.654
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.653
2bhe BRYCyclin-dependent kinase 2 2.7.11.22 0.652
2wih P48Cyclin-dependent kinase 2 2.7.11.22 0.652
1g5s I17Cyclin-dependent kinase 2 2.7.11.22 0.651
2r3i SCFCyclin-dependent kinase 2 2.7.11.22 0.650