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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qbo CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.895
2qbm CAMCamphor 5-monooxygenase 1.14.15.1 0.834
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.833
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.825
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.816
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.810
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.794
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.786
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.781
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.779
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.777
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.772
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.770
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.770
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.766
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.756
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.743
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.737
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.728
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.717
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.700
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.697
4c9o CAMCytochrome P450 / 0.686
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.667
3lxi CAMCytochrome P450 / 0.666
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4c9p CAMCytochrome P450 / 0.651