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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pdm ZST Aldose reductase 1.1.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pdm ZSTAldose reductase 1.1.1.21 1.257
2hvo ZSTAldose reductase 1.1.1.21 1.089
2dux ZSTAldose reductase 1.1.1.21 1.079
2hvn ZSTAldose reductase 1.1.1.21 1.060
2pd5 ZSTAldose reductase 1.1.1.21 1.060
2dv0 ZSTAldose reductase 1.1.1.21 1.058
2hv5 ZSTAldose reductase 1.1.1.21 1.056
2fz9 ZSTAldose reductase 1.1.1.21 1.044
2pdn 47DAldose reductase 1.1.1.21 1.012
3mb9 ZSTAldose reductase 1.1.1.21 1.005
2pdf ZSTAldose reductase 1.1.1.21 0.998
2pdg 47DAldose reductase 1.1.1.21 0.994
2pdx ZSTAldose reductase 1.1.1.21 0.942
2pdi ZSTAldose reductase 1.1.1.21 0.935
2pdh 47DAldose reductase 1.1.1.21 0.920
2pdq 47DAldose reductase 1.1.1.21 0.919
1frb ZSTAldose reductase-related protein 2 / 0.903
2fz8 ZSTAldose reductase 1.1.1.21 0.892
3m0i ZSTAldose reductase 1.1.1.21 0.845
4gca 2X9Aldose reductase 1.1.1.21 0.826
2ikj 393Aldose reductase 1.1.1.21 0.815
3g5e Q74Aldose reductase 1.1.1.21 0.797
2pdc 393Aldose reductase 1.1.1.21 0.796
2pdj 393Aldose reductase 1.1.1.21 0.785
1t40 ID5Aldose reductase 1.1.1.21 0.777
2duz ZSTAldose reductase 1.1.1.21 0.770
1z3n 3NAAldose reductase 1.1.1.21 0.767
2pdb ZSTAldose reductase 1.1.1.21 0.767
2pdp 393Aldose reductase 1.1.1.21 0.764
2pzn 393Aldose reductase 1.1.1.21 0.745
2pdu 393Aldose reductase 1.1.1.21 0.744
3t42 3T4Aldose reductase 1.1.1.21 0.731
3ghu LDTAldose reductase 1.1.1.21 0.730
3ght LDTAldose reductase 1.1.1.21 0.720
3len ZSTAldose reductase 1.1.1.21 0.720
1t41 ID5Aldose reductase 1.1.1.21 0.719
3mc5 393Aldose reductase 1.1.1.21 0.712
3lz5 LDTAldose reductase 1.1.1.21 0.711
3m64 393Aldose reductase 1.1.1.21 0.710
4yu1 53NAldose reductase 1.1.1.21 0.707
3lbo LDTAldose reductase 1.1.1.21 0.704
3s3g TLTAldose reductase 1.1.1.21 0.699
2inz OHPAldose reductase 1.1.1.21 0.691
2ikh LITAldose reductase 1.1.1.21 0.685
3ghr LDTAldose reductase 1.1.1.21 0.677
3ld5 LDTAldose reductase 1.1.1.21 0.676
3lql LDTAldose reductase 1.1.1.21 0.674
2ipw 2CLAldose reductase 1.1.1.21 0.661