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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oax SNL Mineralocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oax SNLMineralocorticoid receptor / 1.193
3vhu SNLMineralocorticoid receptor / 0.918
2ab2 SNLMineralocorticoid receptor / 0.857
2aa7 1CAMineralocorticoid receptor / 0.783
2abi 1CAMineralocorticoid receptor / 0.775
2aax PDNMineralocorticoid receptor / 0.758
2aa5 STRMineralocorticoid receptor / 0.747
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1sqn NDRProgesterone receptor / 0.740
2aa2 AS4Mineralocorticoid receptor / 0.711
2ovm AS0Progesterone receptor / 0.706
3d90 NOGProgesterone receptor / 0.706
1zq5 E04Aldo-keto reductase family 1 member C3 / 0.702
2ovh AS0Progesterone receptor / 0.693
1sr7 MOFProgesterone receptor / 0.690
2w8y NDRProgesterone receptor / 0.687
2ao6 R18Androgen receptor / 0.686
1e3k R18Progesterone receptor / 0.684
4ofr DHTAndrogen receptor / 0.667
1gs4 ZK5Androgen receptor / 0.666
4a2j AS0Progesterone receptor / 0.665
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bur TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.658
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.657
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.656
1p8d CO1Oxysterols receptor LXR-beta / 0.654
3w5r LOAVitamin D3 receptor / 0.654