Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2o4g TMP Three-prime repair exonuclease 1 3.1.11.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2o4g TMPThree-prime repair exonuclease 1 3.1.11.2 0.887
3b6p TMPThree-prime repair exonuclease 1 3.1.11.2 0.817
2ido TMPDNA polymerase III subunit epsilon 2.7.7.7 0.762
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.724
2d09 FLVBiflaviolin synthase CYP158A2 / 0.679
4m42 ATPDNA-directed DNA polymerase / 0.670
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.666
3tw6 ADPPyruvate carboxylase / 0.657
4fjj TTPDNA-directed DNA polymerase / 0.656
1s16 ANPDNA topoisomerase 4 subunit B / 0.652
4fjm DCPDNA-directed DNA polymerase / 0.650