2.350 Å
X-ray
2006-12-04
Name: | Three-prime repair exonuclease 1 |
---|---|
ID: | TREX1_MOUSE |
AC: | Q91XB0 |
Organism: | Mus musculus |
Reign: | Eukaryota |
TaxID: | 10090 |
EC Number: | 3.1.11.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 23.772 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
0.238 | 459.000 |
% Hydrophobic | % Polar |
---|---|
47.06 | 52.94 |
According to VolSite |
HET Code: | TMP |
---|---|
Formula: | C10H13N2O8P |
Molecular weight: | 320.193 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.61 % |
Polar Surface area: | 161.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
2.92167 | -4.13767 | 28.8869 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3' | OE1 | GLU- 20 | 2.67 | 163.6 | H-Bond (Ligand Donor) |
C4' | CB | ALA- 21 | 4.42 | 0 | Hydrophobic |
O3' | N | ALA- 21 | 2.81 | 152.47 | H-Bond (Protein Donor) |
C1' | CD2 | LEU- 24 | 3.65 | 0 | Hydrophobic |
C2' | CB | ALA- 81 | 4.11 | 0 | Hydrophobic |
C2' | CD1 | ILE- 84 | 4.35 | 0 | Hydrophobic |
C3' | CG2 | THR- 85 | 3.98 | 0 | Hydrophobic |
C5' | CE2 | TYR- 129 | 3.73 | 0 | Hydrophobic |
C4' | CZ | TYR- 129 | 3.82 | 0 | Hydrophobic |
O3P | MG | MG- 800 | 2.21 | 0 | Metal Acceptor |
O3P | MG | MG- 801 | 2.37 | 0 | Metal Acceptor |