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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2lba CHO Fatty acid binding protein 6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2lba CHOFatty acid binding protein 6 / 1.120
2jn3 JN3Fatty acid-binding protein, liver / 0.722
2k62 ITLFatty acid-binding protein, liver / 0.710
2z4j DHTAndrogen receptor / 0.683
2pio DHTAndrogen receptor / 0.681
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.681
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.676
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.673
2y02 Y01Beta-1 adrenergic receptor / 0.666
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
2qpy DHTAndrogen receptor / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.657
2ylo TESAndrogen receptor / 0.657
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.655
1t5z DHTAndrogen receptor / 0.653
2q7k TESAndrogen receptor / 0.653
1t7r DHTAndrogen receptor / 0.652
2pnu ENMAndrogen receptor / 0.650