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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jdd ACO Probable acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jdd ACOProbable acetyltransferase / 1.501
2jdc CAOProbable acetyltransferase / 1.383
2bsw CAOProbable acetyltransferase / 1.373
1cjw COTSerotonin N-acetyltransferase / 0.882
5kf9 ACOPredicted acetyltransferase / 0.872
5kf2 ACOPredicted acetyltransferase / 0.868
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.865
4r3k COAN-alpha-acetyltransferase 2.3.1 0.861
5kf8 ACOPredicted acetyltransferase / 0.860
5kgp ACOPredicted acetyltransferase / 0.860
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.824
5kgj ACOPredicted acetyltransferase / 0.821
1n71 COAAac(6')-Ii protein / 0.807
1qsm ACOHistone acetyltransferase HPA2 / 0.802
3pgp ACOUncharacterized protein / 0.798
3mgd ACOPredicted acetyltransferase / 0.797
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.795
2r8v ACOAmino-acid acetyltransferase / 0.788
2psw COAN-alpha-acetyltransferase 50 / 0.787
1mja COAHistone acetyltransferase ESA1 / 0.782
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.781
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.780
1fy7 COAHistone acetyltransferase ESA1 / 0.779
5kf1 ACOPredicted acetyltransferase / 0.776
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.775
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.773
2x7b COAN-alpha-acetyltransferase 2.3.1 0.772
1ib1 COTSerotonin N-acetyltransferase / 0.759
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.759
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.755
1ghe ACOAcetyltransferase 2.3.1 0.754
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.748
4kub COAUncharacterized protein / 0.746
5c88 COAN-alpha-acetyltransferase / 0.745
2y0m ACOHistone acetyltransferase KAT8 / 0.741
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.739
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.739
3bj7 COADiamine acetyltransferase 1 / 0.738
3te4 ACODopamine N-acetyltransferase / 0.737
4qvt ACOAcetyltransferase YpeA 2.3.1 0.736
2ozu ACOHistone acetyltransferase KAT6A / 0.735
4jwp ACOGCN5-related N-acetyltransferase / 0.735
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.735
1kux CA3Serotonin N-acetyltransferase / 0.733
2ou2 ACOHistone acetyltransferase KAT5 / 0.729
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.726
3r95 ACOMccE protein / 0.721
3r96 ACOMccE protein / 0.721
2ge3 ACOProbable acetyltransferase / 0.718
1mj9 COAHistone acetyltransferase ESA1 / 0.716
2cns ACORibosomal-protein-alanine acetyltransferase / 0.716
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.715
1mjb ACOHistone acetyltransferase ESA1 / 0.712
1qsr ACOHAT A1 / 0.712
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.712
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.712
4crz ACOPanD regulatory factor / 0.709
2ob0 ACON-alpha-acetyltransferase 50 / 0.708
3zj0 ACOPutative acetyltransferase OgpAT / 0.707
1b87 ACOAac(6')-Ii protein / 0.706
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.702
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.700
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.699
5kf8 COAPredicted acetyltransferase / 0.698
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.697
1kuy COTSerotonin N-acetyltransferase / 0.695
4r87 COASpermidine N(1)-acetyltransferase / 0.695
1m1d LYXHAT A1 / 0.694
1s7n COAAcetyl transferase / 0.693
4cs0 ACOPanD regulatory factor / 0.692
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.691
2cy2 ACOProbable acetyltransferase / 0.690
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.689
3r1k COAN-acetyltransferase Eis / 0.689
2rc4 ACOHistone acetyltransferase KAT6A / 0.688
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.688
1j4j ACOAcetyltransferase 2.3.1 0.687
3d2m COAAmino-acid acetyltransferase / 0.686
3s6f COAUncharacterized protein / 0.686
1wwz ACOUncharacterized protein / 0.683
2a4n COAAac(6')-Ii protein / 0.682
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.681
3exn ACOProbable acetyltransferase / 0.680
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.679
2fxf ACODiamine acetyltransferase 1 / 0.677
2giv ACOHistone acetyltransferase KAT8 / 0.677
4jxr ACOAcetyltransferase / 0.677
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.673
2wpw ACOOrf14 / 0.671
2bue COAAAC(6')-Ib / 0.670
3f0a ACOSpermidine N(1)-acetyltransferase / 0.669
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.669
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.666
4ava ACOAcetyltransferase Pat 2.3.1 0.665
1qsn COAHAT A1 / 0.661
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.660
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.659
1pu9 COAHAT A1 / 0.656
1pua COAHAT A1 / 0.656
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.654
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.652