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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jcx NDP 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jcx NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 1.022
4aic NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.864
2jd1 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.786
2jd0 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.784
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.755
4rcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.746
1jvs NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.737
3a14 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.730
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.725
3anm NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.719
2jcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.702
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.701
4gae NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.696
5bqf NAPProbable hydroxyacid dehydrogenase protein / 0.687
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.686
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.682
4xcv NDPProbable hydroxyacid dehydrogenase protein / 0.682
1npd NADQuinate/shikimate dehydrogenase / 0.676
4ebf NADPhosphonate dehydrogenase 1.20.1.1 0.676
1i36 NAPConserved protein / 0.673
4e5p NADPhosphonate dehydrogenase 1.20.1.1 0.673
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.672
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.672
3zhb NAPPutative dehydrogenase / 0.670
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.668
3anl NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.667
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.666
1hdo NAPFlavin reductase (NADPH) / 0.661
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.659
3u4c NDPNADPH-dependent reductase BacG / 0.659
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.659
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.656
5dul NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.651