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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iwu NP5 ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.974
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.840
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.814
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.812
2gfd RDAEndoplasmin / 0.795
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.789
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.771
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.758
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.756
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.755
3inw JZBHeat shock protein HSP 90-alpha / 0.754
1qy8 RDIEndoplasmin / 0.748
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.744
2ye4 2FYHeat shock protein HSP 90-alpha / 0.733
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.730
3eko PYUHeat shock protein HSP 90-alpha / 0.728
3inx JZCHeat shock protein HSP 90-alpha / 0.727
4egk RDCHeat shock protein HSP 90-alpha / 0.725
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.724
2wer RDCATP-dependent molecular chaperone HSP82 / 0.721
2yk2 YJWHeat shock protein HSP 90-alpha / 0.701
2q8i RDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial 2.7.11.2 0.691
3k99 PFTHeat shock protein HSP 90-alpha / 0.688
2yei XQIHeat shock protein HSP 90-alpha / 0.671
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.665
2yjw YJWHeat shock protein HSP 90-alpha / 0.656
4bqj XKLHeat shock protein HSP 90-alpha / 0.656
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.651