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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hpv FMN FMN-dependent NADH-azoreductase 1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hpv FMNFMN-dependent NADH-azoreductase 1.7 1.116
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.857
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.814
4j8p FMNFlavodoxin / 0.806
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.800
2ohh FMNType A flavoprotein FprA 1 0.790
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.778
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.776
4r81 FMNPredicted NADH dehydrogenase / 0.776
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.776
1t5b FMNFMN-dependent NADH-azoreductase / 0.772
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.772
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.772
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.769
2z9d FMNFMN-dependent NADH-azoreductase / 0.763
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.755
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.755
3klb FMNUncharacterized protein / 0.754
2q9u FMNA-type flavoprotein / 0.746
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.739
4bmo FMNProtein NrdI / 0.736
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.727
1ych FMNNitric oxide reductase 1 0.727
1ycg FMNNitric oxide reductase 1 0.726
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.725
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.725
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.723
1ycf FMNNitric oxide reductase 1 0.719
3esz FMNFlavodoxin / 0.719
1fue FMNFlavodoxin / 0.717
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.716
1azl FMNFlavodoxin / 0.715
2v5v FMNFlavodoxin / 0.713
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.711
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.710
3f6s FMNFlavodoxin / 0.707
1wsb FMNFlavodoxin / 0.702
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.701
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.700
1akr FMNFlavodoxin / 0.699
2fcr FMNFlavodoxin / 0.699
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.698
3lcm FADPutative oxidoreductase / 0.698
2ohi FMNType A flavoprotein FprA 1 0.695
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.693
1akw FMNFlavodoxin / 0.689
1c7f FMNFlavodoxin / 0.689
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.687
2ohj FMNType A flavoprotein FprA 1 0.685
5tgz FMNCannabinoid receptor 1 / 0.685
1czn FMNFlavodoxin / 0.684
2v5u FMNFlavodoxin / 0.683
3n3b FMNProtein NrdI / 0.681
2bf4 FMNNADPH--cytochrome P450 reductase / 0.680
4bmp FMNProtein NrdI / 0.679
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.679
3esy FMNFlavodoxin / 0.676
3n3a FMNProtein NrdI / 0.674
1ofv FMNFlavodoxin / 0.672
4tmb FMNOld yellow enzyme / 0.671
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.669
1ahn FMNFlavodoxin 1 / 0.665
1amo FMNNADPH--cytochrome P450 reductase / 0.663
1yob FMNFlavodoxin 2 / 0.662
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.659
4y7c FMNNADPH--cytochrome P450 reductase / 0.659
2w5u FMNFlavodoxin / 0.658
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.658
3e4v FMNUncharacterized protein / 0.656
1j9g FMNFlavodoxin / 0.651
2fx2 FMNFlavodoxin / 0.651
1j8q FMNFlavodoxin / 0.650
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.650