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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gpu OHT Estrogen-related receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gpu OHTEstrogen-related receptor gamma / 1.340
2ewp TXFEstrogen-related receptor gamma / 1.084
1s9q OHTEstrogen-related receptor gamma / 0.965
2gpv OHTEstrogen-related receptor gamma / 0.919
2fsz OHTEstrogen receptor beta / 0.821
1xqc AEJEstrogen receptor / 0.779
2jf9 OHTEstrogen receptor / 0.768
3ert OHTEstrogen receptor / 0.742
2bj4 OHTEstrogen receptor / 0.733
1qkn RALEstrogen receptor beta / 0.715
1uom PTIEstrogen receptor / 0.687
2p7z OHTEstrogen-related receptor gamma / 0.679
2ayr L4GEstrogen receptor / 0.674
2z4b DC8Estrogen receptor beta / 0.674
1x7r GENEstrogen receptor / 0.664
1s9p DESEstrogen-related receptor gamma / 0.663
5dx3 ESTEstrogen receptor / 0.663
2qe4 JJ3Estrogen receptor / 0.658
4e5f 0N7Polymerase acidic protein / 0.656
4pp6 STLEstrogen receptor / 0.652
3uvp 048Mitogen-activated protein kinase 14 / 0.651
4iwc 1GVEstrogen receptor / 0.650