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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fx2 FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fx2 FMNFlavodoxin / 1.185
1wsb FMNFlavodoxin / 1.168
1j8q FMNFlavodoxin / 1.149
1xyv FMNFlavodoxin / 1.106
1azl FMNFlavodoxin / 1.062
1c7f FMNFlavodoxin / 1.057
1akr FMNFlavodoxin / 1.047
1akw FMNFlavodoxin / 1.012
1ahn FMNFlavodoxin 1 / 0.971
1xyy FMNFlavodoxin / 0.955
1aku FMNFlavodoxin / 0.929
3esy FMNFlavodoxin / 0.926
3esz FMNFlavodoxin / 0.926
1czn FMNFlavodoxin / 0.914
1ofv FMNFlavodoxin / 0.912
5tgz FMNCannabinoid receptor 1 / 0.911
1j9g FMNFlavodoxin / 0.909
4fx2 FMNFlavodoxin / 0.897
3f6s FMNFlavodoxin / 0.886
2v5u FMNFlavodoxin / 0.884
3f6r FMNFlavodoxin / 0.879
1fx1 FMNFlavodoxin / 0.876
3f90 FMNFlavodoxin / 0.850
3kap FMNFlavodoxin / 0.842
2v5v FMNFlavodoxin / 0.822
1yob FMNFlavodoxin 2 / 0.821
4oxx FMNCindoxin / 0.819
2fcr FMNFlavodoxin / 0.804
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.789
2bf4 FMNNADPH--cytochrome P450 reductase / 0.782
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.779
5xr8 FMNCannabinoid receptor 1 / 0.776
4bmp FMNProtein NrdI / 0.774
5xra FMNCannabinoid receptor 1 / 0.774
4yao FMNNADPH--cytochrome P450 reductase / 0.772
1amo FMNNADPH--cytochrome P450 reductase / 0.766
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.766
3kaq FMNFlavodoxin / 0.762
4bmo FMNProtein NrdI / 0.762
3qe2 FMNNADPH--cytochrome P450 reductase / 0.760
1fue FMNFlavodoxin / 0.748
2bn4 FMNNADPH--cytochrome P450 reductase / 0.747
5fx2 FMNFlavodoxin / 0.747
2mok FMNFlavodoxin 1 / 0.738
1ycf FMNNitric oxide reductase 1 0.736
2ohi FMNType A flavoprotein FprA 1 0.736
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.735
1ja0 FMNNADPH--cytochrome P450 reductase / 0.727
4y7c FMNNADPH--cytochrome P450 reductase / 0.727
3n39 FMNProtein NrdI / 0.722
1ych FMNNitric oxide reductase 1 0.721
1ja1 FMNNADPH--cytochrome P450 reductase / 0.719
2q9u FMNA-type flavoprotein / 0.719
3qfr FMNNADPH--cytochrome P450 reductase / 0.718
3ojx FMNNADPH--cytochrome P450 reductase / 0.716
2ohh FMNType A flavoprotein FprA 1 0.715
2ohj FMNType A flavoprotein FprA 1 0.710
3ojw FMNNADPH--cytochrome P450 reductase / 0.707
2w5u FMNFlavodoxin / 0.684
1bu5 RBFFlavodoxin / 0.683
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.678
1ycg FMNNitric oxide reductase 1 0.675
3n3b FMNProtein NrdI / 0.675
3n3a FMNProtein NrdI / 0.668
1j9z FMNNADPH--cytochrome P450 reductase / 0.666
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.658
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.655
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.651