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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fcr FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fcr FMNFlavodoxin / 1.228
1yob FMNFlavodoxin 2 / 0.932
4oxx FMNCindoxin / 0.904
4bmo FMNProtein NrdI / 0.898
3n39 FMNProtein NrdI / 0.884
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.878
1ofv FMNFlavodoxin / 0.870
3f6s FMNFlavodoxin / 0.852
1czn FMNFlavodoxin / 0.851
4bmp FMNProtein NrdI / 0.838
1azl FMNFlavodoxin / 0.826
2bn4 FMNNADPH--cytochrome P450 reductase / 0.824
1wsb FMNFlavodoxin / 0.821
4y7c FMNNADPH--cytochrome P450 reductase / 0.819
1j8q FMNFlavodoxin / 0.816
1aku FMNFlavodoxin / 0.814
1c7f FMNFlavodoxin / 0.806
2v5v FMNFlavodoxin / 0.805
3n3a FMNProtein NrdI / 0.805
2fx2 FMNFlavodoxin / 0.804
2bf4 FMNNADPH--cytochrome P450 reductase / 0.801
5tgz FMNCannabinoid receptor 1 / 0.798
1fue FMNFlavodoxin / 0.797
3qe2 FMNNADPH--cytochrome P450 reductase / 0.795
1ahn FMNFlavodoxin 1 / 0.794
2w5u FMNFlavodoxin / 0.792
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.789
3ojw FMNNADPH--cytochrome P450 reductase / 0.787
1akr FMNFlavodoxin / 0.786
1amo FMNNADPH--cytochrome P450 reductase / 0.784
2ohh FMNType A flavoprotein FprA 1 0.784
3ojx FMNNADPH--cytochrome P450 reductase / 0.780
1ja0 FMNNADPH--cytochrome P450 reductase / 0.777
1ycf FMNNitric oxide reductase 1 0.776
2v5u FMNFlavodoxin / 0.770
1akw FMNFlavodoxin / 0.769
5xra FMNCannabinoid receptor 1 / 0.766
1fx1 FMNFlavodoxin / 0.760
2ohi FMNType A flavoprotein FprA 1 0.750
2ohj FMNType A flavoprotein FprA 1 0.749
3qfr FMNNADPH--cytochrome P450 reductase / 0.747
4yao FMNNADPH--cytochrome P450 reductase / 0.747
1xyv FMNFlavodoxin / 0.741
2q9u FMNA-type flavoprotein / 0.732
3kap FMNFlavodoxin / 0.731
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.731
3n3b FMNProtein NrdI / 0.728
1ych FMNNitric oxide reductase 1 0.727
1j9g FMNFlavodoxin / 0.725
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.721
4fx2 FMNFlavodoxin / 0.718
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.712
3esz FMNFlavodoxin / 0.711
3f90 FMNFlavodoxin / 0.704
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.699
3eo8 FMNPutative nitroreductase / 0.695
1j9z FMNNADPH--cytochrome P450 reductase / 0.692
1xyy FMNFlavodoxin / 0.691
5xr8 FMNCannabinoid receptor 1 / 0.691
2h8x FMNXenA / 0.690
3klb FMNUncharacterized protein / 0.688
5fx2 FMNFlavodoxin / 0.688
1ycg FMNNitric oxide reductase 1 0.684
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.683
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.679
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.679
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.679
1bu5 RBFFlavodoxin / 0.674
3e4v FMNUncharacterized protein / 0.674
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.673
1ja1 FMNNADPH--cytochrome P450 reductase / 0.672
2zfa FMNLactate oxidase / 0.670
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.667
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.666
2z9d FMNFMN-dependent NADH-azoreductase / 0.665
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.664
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.663
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.663
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.663
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
3esy FMNFlavodoxin / 0.659
3b03 VNRIsopentenyl-diphosphate delta-isomerase / 0.657
4j8p FMNFlavodoxin / 0.657
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.656
1t5b FMNFMN-dependent NADH-azoreductase / 0.655
2d29 FADAcyl-CoA dehydrogenase / 0.655
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.655
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.654
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
1vhn FMNtRNA-dihydrouridine synthase / 0.653
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.653
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.651
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.651
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 0.651
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.650